AJP - Regu Fuel your research with LabChart
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


Am J Physiol Regul Integr Comp Physiol 280: R1206-R1212, 2001;
0363-6119/01 $5.00
This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via ISI Web of Science (10)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Leloup, J.-C.
Right arrow Articles by Goldbeter, A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Leloup, J.-C.
Right arrow Articles by Goldbeter, A.
Vol. 280, Issue 4, R1206-R1212, April 2001

A molecular explanation for the long-term suppression of circadian rhythms by a single light pulse

Jean-Christophe Leloup and Albert Goldbeter

Unité de Chronobiologie théorique, Faculté des Sciences, Université Libre de Bruxelles, Campus Plaine, C.P. 231, B-1050 Brussels, Belgium


    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
RESULTS
DISCUSSION
REFERENCES

With the use of a molecular model for circadian rhythms in Drosophila based on transcriptional regulation, we show how a single, critical pulse of light can permanently suppress circadian rhythmicity, whereas a second light pulse can restore the abolished rhythm. The phenomena occur via the pulsatile induction of either protein degradation or gene expression in conditions in which a stable steady state coexists with stable circadian oscillations of the limit cycle type. The model indicates that suppression by a light pulse can only be accounted for by assuming that the biochemical effects of such a pulse much outlast its actual duration. We determine the characteristics of critical pulses suppressing the oscillations as a function of the phase at which the rhythm is perturbed. The model predicts how the amplitude and duration of the biochemical changes induced by critical pulses vary with this phase. The results provide a molecular, dynamic explanation for the long-term suppression of circadian rhythms observed in a variety of organisms in response to a single light pulse and for the subsequent restoration of the rhythms by a second light pulse.

circadian clock; rhythm suppression; singularity; Drosophila; model


    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
RESULTS
DISCUSSION
REFERENCES

ONE OF THE MOST INTRIGUING observations on circadian rhythms is that they can be suppressed in a prolonged manner by a single pulse of light. Long-term suppression has been reported for a variety of organisms including insects (33), plants (7), and mammals (12, 16, 19). The abolished rhythm can often be restored by a second light pulse (7, 12). These puzzling observations bear on the very nature of the circadian clock mechanism. Physical models of a nonmolecular nature have been used to account for suppression in terms of return of a limit cycle oscillator to its singularity (7, 17, 18, 34). To get deeper insight into the molecular bases of the phenomenon, it is crucial to account for prolonged suppression in a realistic biochemical model in which the effect of light is incorporated explicitly. We report here that a molecular model for the circadian clock, taking into account the triggering by light of either protein degradation or gene expression, can explain the long-term suppression of circadian rhythms by a single, critical light pulse and the restoration of rhythmicity by another such pulse. The model predicts how the duration and amplitude of the biochemical changes induced by critical pulses vary with the phase at which the rhythm is perturbed.

The most detailed model available for the circadian clock (23-25) is based on experimental observations collected for Drosophila; this model (schematized in Fig. 1) relies on negative autoregulation of gene expression (10). A similar feedback mechanism underlies circadian rhythms in other organisms (5) such as Neurospora (2), mammals (21, 30), plants (11), and cyanobacteria (14). For definiteness, we will focus on the Drosophila clock model, but we shall primarily take it as a tool to assess how a single light pulse can trigger long-term suppression of circadian rhythmicity. Thus we shall consider the cases in which light acts by inducing protein degradation, as in Drosophila, or gene expression, as in Neurospora and mammals.


View larger version (28K):
[in this window]
[in a new window]
 
Fig. 1.   Scheme of the model for circadian oscillations in Drosophila involving negative regulation of gene expression by PER and TIM (23). per (MP) and tim (MT) mRNAs are synthesized in the nucleus and transferred into the cytosol, where they accumulate at the maximum rates vsP and vsT, respectively; there they are degraded enzymatically at the maximum rates vmP and vmT. The rates of synthesis of the PER and TIM proteins, proportional to MP and MT, are characterized by the apparent first-order rate constants ksP and ksT. Parameters ViP (ViT) (i = 1, ...4) denote the maximum rate of the kinase(s) and phosphatase(s) involved in the reversible phosphorylation of P0 (T0) into P1 (T1) and P1 (T1) into P2 (T2), respectively. The fully phosphorylated forms (P2 and T2) are degraded by enzymes of maximum rate vdP, vdT, and reversibly form a complex C with association and dissociation rate constants k3, k4. Complex C is transported into the nucleus at a rate characterized by the apparent first-order rate constant k1. Transport of the nuclear form of the PER-TIM complex (CN) into the cytosol is characterized by the apparent first-order rate constant k2. The nuclear PER-TIM complex exerts a negative feedback on per and tim transcription (see Ref. 23 for further details and for a list of the kinetic equations). In Drosophila, light controls the rhythm by enhancing the rate of TIM degradation (vdT). In mammals, in which homologous clock genes are at work and in which a similar model might apply, light acts by enhancing the rate of per expression (vsP).


    RESULTS
TOP
ABSTRACT
INTRODUCTION
RESULTS
DISCUSSION
REFERENCES

Molecular model for the circadian clock. Extending a previous version based on the regulation of per alone (8), the clock model (Fig. 1) takes into account nuclear transcription of the per and tim genes and transport of per and tim mRNAs into the cytosol, where they are translated into the PER and TIM proteins; the latter are multiply phosphorylated (6, 36) and form a complex that enters the nucleus and represses per and tim transcription (13, 22, 27, 35, 36). The model incorporates degradation of the PER and TIM proteins and their mRNAs. Negative regulation by the PER-TIM complex involves interaction with the CYC (28) and CLOCK (1) proteins, which are not considered explicitly in this model; incorporation of these two proteins in an extended model preserves oscillatory behavior. Light controls the Drosophila clock by triggering TIM degradation (13, 22, 27, 35, 36); the maximum rate of TIM degradation (vdT) increases with light, accordingly. In mammals, where per and tim genes are also found (20, 32), light acts by enhancing the rate of per expression (vsP) (31). The model is described by a set of 10 differential equations that govern the time evolution of the concentrations of per and tim mRNAs and of the various forms of PER and TIM proteins and PER-TIM complex (23, 25). This model accounts for circadian oscillations in continuous darkness, entrainment by light-dark cycles, and phase shifting by light pulses (23-25). Phase shifting by a brief light pulse can only be accounted for by assuming that the biochemical effects triggered by the pulse much outlast its actual duration.

Coexistence of a stable rhythm with a stable steady state. Here, we focus on the long-term suppression of circadian rhythmicity by critical light pulses. We will not consider explicitly the light pulse itself. Instead, we will investigate the effect of the pulsatile increase in the light-controlled parameters vdT or vsP that is triggered by the light pulse. Of key importance for suppression is the bifurcation diagram showing the dynamic behavior of the circadian regulatory system as a function of parameters vdT (Fig. 2A) or vsP (Fig. 2B). The diagram of Fig. 2A pertains to the case in which light acts by triggering protein degradation. It represents the dynamic behavior of the oscillatory system by a single state variable, the fully phosphorylated form of the TIM protein (T2), as a function of vdT. At low values of vdT, a stable steady state is obtained. As vdT increases, the steady state becomes unstable, and sustained oscillations of the limit cycle type occur. Shown in Fig. 2A is the envelope of oscillations giving the minimum and maximum levels of T2 at different values of vdT. Beyond a second bifurcation value, the steady state recovers its stability. For the set of parameter values considered, over a sizeable range of vdT values both to the left and to the right of the steady-state instability domain in Fig. 2A, a stable steady state coexists with a stable limit cycle. These two stable regimes are separated by an unstable limit cycle. Such a situation is referred to as hard excitation (26), because the system in the stable steady state has to be excited by a finite perturbation to evolve to the stable limit cycle. In contrast, when the steady state is unstable, an infinitesimal perturbation suffices to drive the system away from steady state toward the limit cycle (soft excitation). A similar type of bifurcation diagram is obtained as a function of parameter vsP (Fig. 2B), for the case in which light acts by triggering gene expression.


View larger version (19K):
[in this window]
[in a new window]
 
Fig. 2.   Bifurcation diagram showing the domain of sustained oscillations as a function of the light-controlled parameter in the molecular model for the circadian clock. The diagrams represent the stable (solid line) or unstable (dashed line) steady-state value of a state variable [the concentration of the phosphorylated TIM form (A) or of per mRNA (B), in nM], as well as its envelope [maximum (Max) and minimum (Min)] in the course of stable (solid line) or unstable (dotted line) sustained oscillations, as a function of vdT (A) or vsP (B). In A, the 1st (vdT = 1.3 nM/h) and 2nd arrow (vdT = 2.2 nM/h) correspond to conditions exemplifying hard and soft excitation, respectively. In the domain of hard excitation, a stable limit cycle (see Fig. 4A) coexists with a stable steady state; these 2 attractors are separated by an unstable limit cycle. The diagrams are established by determining, by means of the AUTO program (4), the steady state and periodic solutions of the kinetic equations of the model listed as equations 1a-1j in Ref. 23. Parameter values are as in Ref. 23, except vsP = 1.1 (for A), vdT = 1.3 (for B), vmP = 1.0, vdP = 2.2 (all in nM/h), and k1 = 0.8/h.

Circadian rhythm suppression by a single light pulse via light-induced protein degradation. In the simulations, we first consider that a pulse of light results in a pulsatile increase in parameter vdT during a time that generally outlasts the duration of the light pulse itself. The light pulse may indeed trigger the pulsatile synthesis or activation of an enzyme involved in the proteolytic pathway. This enzyme may remain active long after the light stimulus has ended. In the range of vdT values, in which a stable limit cycle surrounds an unstable steady state (for example, for the value indicated by the second arrow in Fig. 2A), a pulse of light applied at the appropriate phase with the appropriate duration and magnitude can only suppress the rhythm transiently. Then, indeed, if the finely tuned pulse succeeds in bringing the oscillator in the close vicinity of the singularity (i.e., the steady state), the system will skip a variable number of peaks before returning spontaneously to the limit cycle; the closer the system approaches the steady state, the more delayed is this return.

In contrast, suppression of the rhythm becomes permanent in conditions of hard excitation. Then, as shown in Fig. 3, which corresponds to the vdT value indicated by the first arrow in Fig. 2A, when applied at the appropriate phase of the oscillations with appropriate duration and magnitude, a critical light pulse can permanently abolish circadian rhythmicity (Fig. 3, first arrow). Suppression of the rhythm results from the light-induced degradation of TIM that causes a decrease in the protein below a critical level, which drives the oscillator into the basin of attraction of the stable steady state. An identical pulse (Fig. 3, second arrow) restores the suppressed rhythm; here, the decrease in TIM beyond a critical level brings the system back into the basin of attraction of the stable limit cycle.


View larger version (31K):
[in this window]
[in a new window]
 
Fig. 3.   Permanent rhythm suppression by a single, critical pulse of light in the circadian clock model and restoration of the rhythm by a similar pulse. At the time indicated by the 1st arrow, to mimick the effect of a light pulse, parameter vdT is increased during 2 h from the basal value of 1.3 nM/h up to 4.0 nM/h. Initial conditions correspond to point 4 in Fig. 4, A and B. At the time indicated by a 2nd arrow, a similar change in vdT, mimicking a 2nd light pulse, is initiated. The curve is obtained by numerical integration of the model equations (23) for the parameter values of Fig. 2.

To permanently suppress the rhythm by a single light pulse, neither the phase at which it is applied nor the characteristics of the critical perturbation are uniquely defined. As indicated in Fig. 4A, the model predicts that permanent suppression by a light pulse can be observed over a large portion of the limit cycle, corresponding roughly to the rising phase of the TIM protein (Fig. 4B), between the two black dots. At each of the phases in this portion of the limit cycle, several combinations of the duration and amplitude of the light-induced rise in parameter vdT are capable of permanent suppression. Thus, at a given phase of the cycle, in the amplitude-duration plane for the effect of the light pulse, there exists a domain (rather than a point corresponding to a unique pair of values) in which single critical pulses can abolish the rhythm. The shape of this domain changes as a function of phase: the model predicts (Fig. 4C) that as the oscillations progress in the permissive range from the minimum to the maximum level of TIM, the pulses capable of permanently suppressing the rhythm are, at first, those that produce a relatively long but small-amplitude increase in TIM degradation, whereas near the maximum of TIM, successful pulses are those that cause a large-amplitude but briefer increase in this parameter. Relating these predictions to experiments in Drosophila will require the quantitative determination of the effect of light pulses of varying intensity and duration on the rate of TIM degradation.


View larger version (15K):
[in this window]
[in a new window]
 
Fig. 4.   Effects of phase on rhythm suppression through light-induced TIM degradation. A: single critical pulses can permanently suppress the rhythm when applied over the portion of the limit cycle (closed arrowed curve shown as projection onto the plane formed by the concentrations of phosphorylated TIM and tim mRNA) bounded by the 2 black dots. As shown in B, this portion corresponds to the rising phase of TIM. The trajectory starting from point 4 corresponds to the rhythm suppression by a critical light pulse, shown in Fig. 3. The other trajectory starts at a point () located after the TIM maximum; the same stimulus used in Fig. 3 fails to suppress the rhythm, and the system returns to the limit cycle. Shown in A and B are 5 points of the limit cycle, marked 1-5, for which characteristics of suppressing pulses were determined. The 5 domains in C, within which permanent suppression is observed, correspond to these points. The domains, determined by numerical simulations using the parameter values of Fig. 2A (1st arrow), show the amplitude and duration of the light-induced increase in vdT, which cause permanent suppression of the rhythm. Qualitatively similar results were obtained for other basal values of vdT in the domain of hard excitation in Fig. 2A. Amplitude is defined as the ratio of the light-induced value of vdT divided by the basal value (i.e., the value before the pulse). Concentrations in A and B are in nM.

The reason why the suppressive range corresponds roughly to the rise in TIM becomes clearer when comparing the effect of the same pulse given either in the suppressive range (e.g., starting from point 4 in Fig. 4A) or outside this range, after the maximum in TIM (see trajectory starting from the black square in Fig. 4A). In the former case, the effect of the pulse goes against the flow as it tends to reduce TIM at a time when the protein level is increasing. The system is thus pulled back and, as a result, evolves toward the inside of the limit cycle where it is captured by the attracting stable steady state. The level of tim mRNA, although high at the beginning of the pulse, cannot counteract the light-induced decrease in TIM and is also pulled to its steady-state value (see Fig. 4A). When the same pulse is given after the maximum in TIM, when the protein level has started to decrease, its effect accompanies the flow so that the decrease in TIM is larger than in the previous case; the system moves out of the limit cycle but returns to it asymptotically. In such a case, the perturbation does not suppress the rhythm but merely causes a phase shift.

Circadian rhythm suppression via light-induced gene expression. In view of experimental observations (31), circadian rhythm suppression by light pulses in mammals probably involves light-induced transcription rather than protein degradation. To address such a possibility in the present model, assuming that it holds for mammals, in which the same clock genes are present (20, 32), we have checked whether permanent suppression can occur in conditions of hard excitation in Fig. 2B, solely as a result of a transient increase in per transcription in response to a light pulse (31), in the absence of light-induced TIM degradation. Here, in the simulations, we implement the effect of a light pulse by increasing parameter vsP in a pulsatile manner during a time that may exceed the duration of the triggering light pulse. The suppression of circadian oscillations of per mRNA by a critical pulse of per expression is demonstrated in Fig. 5A (1st arrow); restoration of the rhythm by a second such pulse can also occur (Fig. 5A, 2nd arrow). The changes in T2 associated with the suppression and subsequent restoration of circadian rhythmicity by critical pulses of per expression are shown in Fig. 5B (1st and 2nd arrow, respectively).


View larger version (30K):
[in this window]
[in a new window]
 
Fig. 5.   Long-term suppression of circadian rhythmicity by pulsatile gene expression. In A, the oscillations in per mRNA are suppressed by a critical pulse in per expression (1st arrow) effected by a pulsatile increase in parameter vsP, which is increased from a basal value of 1.1 nM/h up to 2.2 nM/h during 7.5 h. The initial conditions correspond to point 3 in the 3 panels of Fig. 6. A second, similar pulse (2nd arrow) restores the oscillations. The associated time variation in TIM protein (T2) is shown in B. Parameter values are as in Fig. 3 with vdP = 1.3 nM/h.

Permanent suppression of the rhythm resulting from the pulsatile expression of per can occur over a wide range of phases, corresponding to the portion of the limit cycle bounded by the two empty circles in Fig. 6A, that extends from the maximum of per mRNA to a point located beyond the trough (Fig. 6B). The shape of the domain of suppressing pulses in the amplitude-duration plane again changes with phase (Fig. 6C). Compared with Fig. 4C, however, as the phase changes, the duration of these pulses varies more than their amplitude. The domains of suppressing pulses in Fig. 6C are also smaller than those observed in Fig. 4C. Permanent suppression by light-induced gene expression might thus require finer tuning than suppression by light-induced protein degradation.


View larger version (12K):
[in this window]
[in a new window]
 
Fig. 6.   Effect of phase on rhythm suppression by pulsatile light-induced transcription of per. A: single critical pulses can permanently suppress the rhythm when applied over the portion of the limit cycle bounded by the 2 empty circles. Shown in this portion are 5 points marked 1-5, for which characteristics of suppressing pulses were determined. The 5 points are within the range extending from the maximum in per mRNA to slightly beyond the trough in this variable (B). The 5 domains in C, within which permanent suppression is observed, correspond to these points. The domains, determined by numerical simulations using the parameter values of Fig. 2B, show the amplitude and duration of the light-induced increase in vsP that cause permanent suppression of the rhythm. Amplitude is defined as the ratio of the light-induced value of vsP divided by the value (1.1 nM/h) before the pulse. Concentrations in A and B are in nM.

In contrast, restoration of the abolished rhythm appears to be more easy to achieve when the light pulse induces gene expression rather than protein degradation. In the former case, the return to the limit cycle occurs for changes in biochemical parameters of relatively shorter duration and amplitude (compare curves a and b in Fig. 7). More generally, it is less arduous to restore the rhythm than to suppress it, because it is enough for the pulse to exceed a critical duration, at a given suprathreshold amplitude, for the rhythm to resume.


View larger version (20K):
[in this window]
[in a new window]
 
Fig. 7.   Duration and amplitude of pulses restoring circadian oscillations. When the oscillations are suppressed and the system is at steady state, return to the limit cycle via a light-induced rise in parameter vsP measuring per expression occurs when the pulse characteristics correspond to a point above the lower boundary (curve a). Restoration of rhythmicity via a light-induced rise in parameter vdT occurs when the pulse characteristics correspond to a point above the upper boundary (curve b). Parameter values are as in Figs. 3-6; the amplitude of the pulse in vdT or vsP is defined as in Figs. 4 and 6, respectively.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
RESULTS
DISCUSSION
REFERENCES

The present results account, in terms of a realistic molecular mechanism, for the long-term suppression of circadian rhythms by a single light pulse. The phenomenon has been observed for the D. pseudoobscura circadian rhythm of pupal eclosion (33), for the circadian rhythm of petal movement in Kalanchoe (7), and for circadian rhythms in hamster (19), chipmunk (12), and human (16). The results also account for the restoration of these rhythms by a similar light pulse (7, 12). The link between suppression and the situation in which stable oscillations coexist with a stable steady state was already made when circadian rhythms were first related to limit cycle behavior (17). The suppression phenomenon in Kalanchoe was later accounted for in terms of hard excitation by means of the Van der Pol oscillator model borrowed from the physical literature (7). The present report provides a first instance in which permanent rhythm suppression by a critical light pulse occurs in a realistic molecular model for a circadian clock. This phenomenon eludes sheer intuition and can only be explained by means of a theoretical model.

The present explanation of long-term suppression of circadian rhythmicity differs from the alternative explanation based on a putative desynchronization of circadian pacemakers following perturbation by the light pulse (12, 34). Here, suppression results from the pulse-induced transition occurring in all pacemaker cells from a stable oscillatory regime to a stable steady state. Ultradian illustrations of an analogous phenomenon have been reported for squid axon membranes (9) and cardiac tissue (15), in which repetitive firing was suppressed by a brief depolarizing or hyperpolarizing current pulse, respectively.

The analysis of the model suggests that long-term suppression of circadian rhythms by critical light pulses should not necessarily be observed in all organisms. Whether suppression possesses a permanent or only transient nature will depend on whether the regulatory network controlling the circadian clock operates in conditions in which a stable limit cycle coexists with a stable singularity. Transient and permanent suppression differ in two respects. In the former case, the rhythm resumes by itself without external intervention; in the latter, restoration of the rhythm requires a new pulse of light. Permanent suppression is also more robust, i.e., less difficult to achieve, because the pulse has to bring the oscillator anywhere into the basin of attraction of the steady state rather than in its close vicinity.

Until systematic experiments are done over a wide range of light-pulse amplitudes and durations, the question remains as to whether permanent suppression of the locomotor activity rhythm can occur in D. melanogaster. Suppression of circadian rhythms has been linked to type 0 phase-response curves (PRC) associated with strong resetting to a single phase (33, 34). Such a PRC has been obtained in D. melanogaster for 6 h light stimuli, whereas a low-amplitude type 1 PRC showing only moderate phase advances or delays was obtained for a 1-h light pulse of similar intensity (29). The model can account for both types of PRC depending on the duration and magnitude of the pulse of light-induced TIM degradation. The fact that the experiments on the type 0 PRC showed phase shifts rather than long-term suppression of the locomotor activity rhythm in D. melanogaster (29) would suggest that the latter phenomenon does not occur in this organism, but the pulses used may have missed the domains of permanent suppression shown in Fig. 4C.

Although they were obtained in a model based on the molecular mechanism of the Drosophila clock, the results bear on light-induced suppression of circadian rhythms in other organisms. The negative autoregulatory feedback loop that forms the core of the oscillatory mechanism in Drosophila is indeed observed in mammals, in which homologs of the Drosophila clock genes are found (20, 32), and in Neurospora, in which the frq gene is negatively regulated by its protein product FRQ (2, 5). Mechanistic differences between flies, fungi, and mammals exist: for example, the role of TIM in mammals may differ from that seen in Drosophila (5). Moreover, in Neurospora (3) and mammals (31), light triggers transcription instead of protein degradation. The general significance of our results is nevertheless supported by the fact that hard excitation is a robust phenomenon in models for this and other nonlinear regulatory systems and by the finding that the long-term suppression and subsequent restoration of circadian rhythms by a critical perturbation can occur via pulsatile protein degradation or pulsatile gene expression.

The present results also indicate that long-term suppression of circadian rhythms should also be observable in Drosophila and other organisms by directly triggering per or tim expression. The pulsatile perturbation silencing rhythmicity in Fig. 6 may indeed be obtained either with light, in organisms in which it triggers transcription, or by means of a promoter inducing gene expression.

Perspectives

Few phenomena in physiology remain as puzzling as the long-term suppression of circadian rhythmicity by a single light pulse and the subsequent restoration of the rhythm by a second pulse. Explanation of these observations escapes sheer intuition and has therefore much to gain from a modeling approach. One commonly invoked scenario for suppression rests on the pulse-induced desynchronization of oscillators responsible for circadian rhythmicity. An alternative mechanism investigated here involves the pulse-triggered transition of pacemaker cells from a stable oscillatory regime into a stable steady state in conditions in which these two states coexist. Restoration of the suppressed rhythm by a second light pulse involves the reverse transition from the stable steady state to stable oscillations. Although the theoretical principle of such an explanation is not novel, this study provides its first implementation based on a detailed molecular mechanism for circadian rhythms. The effects of light pulses are mediated through induction of either protein degradation or gene expression. By providing an explicit mechanism in terms of complex dynamical processes at the molecular level for a behavioral response that largely stands as a physiological enigma, the present results yield a striking application of concepts from nonlinear dynamics to biology. They also give a clear-cut example of how theoretical models closely related to experiments may contribute new, counterintuitive insights that could not have been reached without resorting to a modeling approach.


    ACKNOWLEDGEMENTS

This work was supported by Grant 3.4607.99 from the Fonds de la Recherche Scientifique Médicale (Belgium), by the programme "Actions de Recherche Concertée" (ARC 94-99/180) launched by the Division of Scientific Research, Ministry of Science and Education, French Community of Belgium.


    FOOTNOTES

J.-C. Leloup is Chargé de Recherches du Fonds National de la Recherche Scientifique.

Address for reprint requests and other correspondence: A. Goldbeter, Unité de Chronobiologie théorique, Faculté des Sciences, Université Libre de Bruxelles, Campus Plaine, C.P. 231, B-1050 Brussels, Belgium (E-mail: agoldbet{at}ulb.ac.be).

The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

Received 13 July 2000; accepted in final form 13 November 2000.


    REFERENCES
TOP
ABSTRACT
INTRODUCTION
RESULTS
DISCUSSION
REFERENCES

1.   Allada, R, White NE, So WV, Hall JC, and Rosbash M. A mutant Drosophila homolog of mammalian clock disrupts circadian rhythms and transcription of period and timeless. Cell 93: 791-804, 1998[ISI][Medline].

2.   Aronson, BD, Johnson KA, Loros JJ, and Dunlap JC. Negative feedback defining a circadian clock: autoregulation of the clock gene frequency. Science 263: 1578-1584, 1994[Abstract/Free Full Text].

3.   Crosthwaite, SK, Loros JJ, and Dunlap JC. Light-induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript. Cell 81: 1003-1012, 1995[ISI][Medline].

4.   Doedel, EJ. AUTO: a program for the automatic bifurcation analysis of autonomous systems. Congr Num 30: 265-284, 1981.

5.   Dunlap, JC. Molecular bases for circadian clocks. Cell 96: 271-290, 1999[ISI][Medline].

6.   Edery, I, Zwiebel LJ, Dembinska ME, and Rosbash M. Temporal phosphorylation of the Drosophila period protein. Proc Natl Acad Sci USA 91: 2260-2264, 1994[Abstract/Free Full Text].

7.   Engelmann, W, Johnsson A, Kobler HG, and Schimmel M. Attenuation of the petal movement rhythm in Kalanchoë with light pulses. Physiol Plant 43: 68-76, 1978.

8.   Goldbeter, A. Biochemical Oscillations and Cellular Rhythms: The Molecular Bases of Periodic and Chaotic Behaviour. Cambridge: Cambridge University Press, 1996.

9.   Guttman, R, Lewis S, and Rinzel J. Control of repetitive firing in squid axon membrane as a model for a neuron oscillator. J Physiol (Lond) 305: 377-395, 1980[Abstract/Free Full Text].

10.   Hardin, PE, Hall JC, and Rosbash M. Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels. Nature 343: 536-540, 1990[Medline].

11.   Heintzen, C, Nater M, Apel K, and Staiger D. AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana. Proc Natl Acad Sci USA 94: 8515-8520, 1997[Abstract/Free Full Text].

12.   Honma, S, and Honma K. Light-induced uncoupling of multioscillatory circadian system in a diurnal rodent, Asian chipmunk. Am J Physiol Regulatory Integrative Comp Physiol 276: R1390-R1396, 1999[Abstract/Free Full Text].

13.   Hunter-Ensor, M, Ousley A, and Sehgal A. Regulation of the Drosophila protein timeless suggests a mechanism for resetting the circadian clock by light. Cell 84: 677-685, 1996[ISI][Medline].

14.   Ishiura, M, Kutsuna S, Aoki S, Iwasaki H, Anderson CR, Tanabe A, Golden SS, Johnson CH, and Kondo T. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519-1523, 1998[Abstract/Free Full Text].

15.   Jalife, J, and Antzelevitch C. Phase resetting and annihilation of pacemaker activity in cardiac tissue. Science 206: 695-697, 1979[Abstract/Free Full Text].

16.   Jewett, ME, Kronauer RE, and Czeisler CA. Light-induced suppression of endogenous circadian amplitude in humans. Nature 350: 59-62, 1991[Medline].

17.   Kalmus, H, and Wigglesworth LA. Shock excited systems as models for biological rhythms. Cold Spring Harb Symp Quant Biol XXV: 211-216, 1960.

18.   Karlsson, HG, and Johnsson A. A feedback model for biological rhythms. II. Comparisons with experimental results, especially on the petal rhythm of Kalanchoe. J Theor Biol 36: 175-194, 1972[ISI][Medline].

19.   Klante, G, and Steinlechner S. A short red light pulse during dark phase of LD-cycle perturbs the hamster's circadian clock. J Comp Physiol [A] 177: 775-780, 1995[Medline].

20.   Koike, N, Hida A, Numano R, Hirose M, Sakaki Y, and Tei H. Identification of the mammalian homologues of the Drosophila timeless gene, Timeless1. FEBS Lett 441: 427-431, 1998[ISI][Medline].

21.   Kume, K, Zylka MJ, Sriram S, Shearman LP, Weaver DR, Jin X, Maywood ES, Hastings MH, and Reppert SM. mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell 98: 193-205, 1999[ISI][Medline].

22.   Lee, C, Parikh V, Itsukaichi T, Bae K, and Edery I. Resetting the Drosophila clock by photic regulation of PER and a PER-TIM complex. Science 271: 1740-1744, 1996[Abstract].

23.   Leloup, JC, and Goldbeter A. A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins. J Biol Rhythms 13: 70-87, 1998[Abstract].

24.   Leloup, JC, and Goldbeter A. Modeling the molecular regulatory mechanism of circadian rhythms in Drosophila. BioEssays 22: 83-92, 2000.

25.   Leloup, JC, Gonze D, and Goldbeter A. Limit cycle models for circadian rhythms based on transcriptional regulation in Neurospora and Drosophila. J Biol Rhythms 14: 433-448, 1999[Abstract].

26.   Minorsky, N. Nonlinear Oscillations. Princeton: Van Nostrand, 1962.

27.   Myers, MP, Wager-Smith K, Rothenfluh-Hilfiker A, and Young MW. Light-induced degradation of TIMELESS and entrainment of the Drosophila circadian clock. Science 271: 1736-1740, 1996[Abstract].

28.   Rutila, JE, Suri V, Le M, So WV, Rosbash M, and Hall JC. CYCLE is a second bHLH-PAS clock protein essential for circadian rhythmicity and transcription of Drosophila period and timeless. Cell 93: 805-814, 1998[ISI][Medline].

29.   Saunders, DS, Gillanders SW, and Lewis RD. Light-pulse phase response curves for the locomotor activity rhythm in period mutants of Drosophila melanogaster. J Insect Physiol 40: 957-968, 1994.

30.   Shearman, LP, Sriram S, Weaver DR, Maywood ES, Chaves I, Zheng B, Kume K, Lee CC, van der Horst GT, Hastings MH, and Reppert SM. Interacting molecular loops in the mammalian circadian clock. Science 288: 1013-1019, 2000[Abstract/Free Full Text].

31.   Shigeyoshi, Y, Taguchi K, Yamamoto S, Takekida S, Yan L, Tei H, Moriya T, Shibata S, Loros JJ, Dunlap JC, and Okamura H. Light-induced resetting of a mammalian circadian clock is associated with rapid induction of the mPER1 transcript. Cell 91: 1043-1053, 1997[ISI][Medline].

32.   Tei, H, Okamura H, Shigeyoshi Y, Fukuhara C, Ozawa R, Hirose M, and Sakaki Y. Circadian oscillation of a mammalian homologue of the Drosophila period gene. Nature 389: 512-516, 1997[Medline].

33.   Winfree, AT. Integrated view of resetting a circadian clock. J Theor Biol 28: 327-374, 1970[ISI][Medline].

34.   Winfree, AT. The Geometry of Biological Time. New York: Springer, 1980.

35.   Young, MW. The molecular control of circadian behavioral rhythms and their entrainment in Drosophila. Annu Rev Biochem 67: 135-152, 1998[ISI][Medline].

36.   Zeng, H, Qian Z, Myers MP, and Rosbash M. A light-entrainment mechanism for the Drosophila circadian clock. Nature 380: 129-135, 1996[Medline].


Am J Physiol Regul Integr Comp Physiol 280(4):R1206-R1212
0363-6119/01 $5.00 Copyright © 2001 the American Physiological Society



This article has been cited by other articles:


Home page
J Biol RhythmsHome page
N. F. Ruby, M. T. Barakat, and H. C. Heller
Phenotypic Differences in Reentrainment Behavior and Sensitivity to Nighttime Light Pulses in Siberian Hamsters
J Biol Rhythms, December 1, 2004; 19(6): 530 - 541.
[Abstract] [PDF]


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via ISI Web of Science (10)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Leloup, J.-C.
Right arrow Articles by Goldbeter, A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Leloup, J.-C.
Right arrow Articles by Goldbeter, A.


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Visit Other APS Journals Online