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9-acyl-CoA desaturase
isoforms
School of Biological Sciences, University of Liverpool, Liverpool L69 7ZB, United Kingdom
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ABSTRACT |
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Carp respond to cold
by the upregulated expression of
9-acyl-CoA desaturase. Here we
report the cloning and characterization of Cds2, a second
9-acyl CoA-desaturase expressed in carp liver. Both Cds1
and Cds2 complemented the ole1 mutation in
Saccharomyces cerevisiae, permitting the synthesis of
9-monounsaturates, confirming their identity as
9-desaturases. We
demonstrate that under a standard feeding regime it is the
Cds2, and not Cds1, transcript that is
transiently upregulated during the first few days of cooling from
30°C to 10°C, the period when cold-induced membrane restructuring occurs. Cds2 exists as two differentially spliced
transcripts, differing by a small segment from the 3'-untranslated
region, the ratio of which varies with temperature. Feeding a diet
enriched in saturated fats produced a fourfold increase in
Cds1 transcript levels, which was blocked by cooling to
15°C. Cds2 transcript levels, however, showed no
substantial response to the saturated diet. Thus carp liver uniquely
expresses two isoforms of
9-acyl CoA desaturase, possibly formed by
a recent duplication event, that are differentially regulated by
cooling and dietary treatment.
temperature adaptation; lipid adaptation; membrane adaptation; homeoviscous adaptation
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INTRODUCTION |
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THE PHYSICAL PROPERTIES of the phospholipid membranes are heavily dependent on the saturation of their constituent fatty acids (11). Maintaining an appropriate balance between saturated and unsaturated fatty acids, in the face of a variable dietary supply, is therefore an essential compositional requirement for all living organisms. This situation is further complicated by changes in cell temperature. This is because membrane physical properties are highly temperature dependent, and fluctuations in cellular temperature may disturb the normal function of membrane systems. Organisms that regularly experience variations in body temperature (i.e., poikilotherms), and therefore cell temperature, mitigate these effects by activating a series of corrective mechanisms to preserve function over the normal range of temperatures and to prevent breakdown at thermal extremes (7). In the case of cellular membranes, this is evident as a cold-induced increase in fatty acid unsaturation that provides a disordering influence to offset the direct ordering effect of cooling. Warm acclimation induces the reverse response. The resulting homeostatic regulation of membrane physical structure is termed homeoviscous (28) or homeophasic adaptation (14) and is a highly conserved process observed widely in microorganisms, plants, and animals.
Recent progress using molecular genetic techniques in a wide range of
organisms has identified a central role of acyl-desaturases in this
environmental response (19). For example, in the
cyanobacterium Synechocystis, cold causes the rapid
transcriptional upregulation of the acyl-CoA
9-desaturase
(18), and a similar response has been recorded in higher
plants (22). This enzyme inserts the first double bond
typically at the 9-10 position of a saturated carbon chain, a
position that maximizes the change in physical properties
(3).
In the common carp Cyprinus carpio, a hepatic desaturase is
transiently upregulated in the few days after a slow progressive cooling treatment (27, 36), and this correlates
particularly with an increase in monoenoic fatty acids in the
sn-1 position of ethanolamine phosphoglycerides
(32). We have previously cloned a carp homolog of a rat
stearoyl-CoA
9-desaturase (SCD1) and have shown that
transcript amounts increase 8- to 10-fold in the few days after cold
treatment, due at least in part to enhanced transcription
(32). The induction of desaturase activity was also
brought about by the activation of preexisting but latent desaturase
protein, perhaps posttranslationally. The transcriptional response
occurs with more extreme cooling treatments and with a slower time
course than the activation response, the two offering a graded response
of desaturase activity to the magnitude and speed of the change in
temperature (33). In mammals the expression of the hepatic
9-desaturase is subject to dietary control (29), although little is known about dietary influences on the cold-induced carp
9-desaturase.
We now report the cloning and characterization of a second carp
desaturase, termed Cds2, which is also expressed mainly in the liver. We have developed probes to distinguish between the two
coexpressed transcripts and demonstrate that expression of Cds2 is upregulated by cooling from 30°C to 15°C,
instead of Cds1 as previously reported (32). We
demonstrate that both genes code for
9-desaturases by heterologous
complementation analysis of a Saccharomyces cerevisiae
mutant strain deficient in this enzyme. Finally, we establish that
Cds1 is strongly induced by feeding a saturated diet,
indicating a quite different physiological regulation compared with
Cds2. This situation appears to have arisen by promoter
divergence of duplicated carp desaturases after a genome duplication event.
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EXPERIMENTAL PROCEDURES |
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Carp maintenance and cooling treatment. Carp (Cyprinus carpio L., 0.2-0.5 kg) were obtained from a local fish farm (Clearwater, Fiddlers Ferry Power Station, Widnes, UK) and held for at least 2 mo at 30 ± 0.5°C in large 2,000-liter tanks provided with recirculation filters. The carp were routinely fed twice daily on trout pellets (Trouw UK, Preston, UK) containing 21% (wt/vol) crude oils and 49% (wt/vol) crude protein. For cooling treatment, fish were transferred to 1,000-liter tanks and cooled at 1°C/h to a maximum of 7°C/day, reaching a temperature of 10°C on day 3 of the cooling (27) at which temperature they were held for up to 69 days.
Dietary treatment.
Fish were transferred to 1,000-liter tanks and fed at 0.5% of
their body weight twice daily, two groups being fed the trout pellet
diet and another two groups a specially formulated and pelleted diet
containing elevated proportions of saturated fats (see Table
1). The saturated fat diet contained (in
%dry weight) fish meal (5%), Soya bean protein concentrate (39%),
potato starch (47.5%), coconut oil (3.8%), inosine (0.2%),
carboxymethylcellulose as binder (1%), vitamins (1.5%), minerals
(0.5%), and calcium phosphate (1.5%). Fish fed control and the
saturated fat diets were fed for 14 days at 30°C. One tank for each
diet treatment was then cooled at 1°C/h to 23°C on day 1 and to 15°C on day 2 at which temperature they were
maintained for a further 14 days. At each of the indicated times,
replicate fish from each treatment group were killed and their livers
excised for RNA extraction. Transcript levels for Cds1 and
Cds2 were compared between groups of fish at a given time
point using the nonparametric Wilcoxon's signed rank test, which makes
no assumptions about the shape of the data.
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Yeast strains and growth conditions.
Yeast strain Aw3a (MATa, leu2-3, leu2-112, trp1-1,
can1-100, ura3-1, ade2-1,
ole1
::LEU2) was kindly provided by
Prof. C. Martin (21) and strain FY251 (MATa, ura3-52,
his3
200, leu2
1, trp1
63) by Dr. A. Platt. Yeast was grown on
synthetic complete drop-out (SCDO) media, and all physical
manipulations, including protein extraction and transformation, were
performed as described by Adams (1). Aw3a were grown on
SCDO containing 0.5 mM palmitoleic acid and 0.5 mM oleic acid plus 1%
(vol/vol) tergitol type NP-40 (Sigma Chemicals). Heterologous
expression of Cds1 and Cds2 as fusion proteins
was achieved using the S. cerevisiae expression vector
pXY213 (R&D Systems, Abingdon, UK). Oligonucleotide primers (Csd1
BamHI, 5'-GGGATCCTGACAGGGACATCAAATCTCCA-3'; Csd2 BamHI, 5'-GGGATCCAGACAGGGAAATCAAATCTCC-3') were used to introduce a
BamHI restriction site into the second codon of the
Cds1 and Cds2 reading frames by PCR. PCR was
carried out using the Accurase Taq Polymerase (Biogene)
according to the manufacturer's recommendations, and the resulting
products were cloned into pGEM-TEasy (Promega) and sequenced to confirm
sequence fidelity. The BamHI sites were then used to excise
the Cds coding regions. This allowed the Cds1 and Cds2 fragments to be ligated into the pXY213 expression
vector in frame with the translation initiation site to create
pXY::Cds1 and pXY::Cds2,
respectively. The yeast ole1 mutant strain Aw3a was
transformed with either pXY::Cds1,
pXY::Cds2, or the empty expression vector
pXY213::MBV and transformants selected on SCDO plus glucose
plus oleic and palmitoleic fatty acids. Mutants expressing a functional
9-desaturase were selected by their growth on SCDO plus galactose as
sole carbon source in the absence of fatty acid supplementation.
Fatty acid composition. Ura+ cells were isolated and grown for 120 h on SCDO medium plus galactose as sole carbon source in the presence of 0, 0.1, and 1 mM linoleic acid. Yeast cells were washed into 100 mM phosphate-buffered saline by repeated centrifugation. Total lipid fraction was extracted from the resulting pellet as described previously (4). Fatty acids were saponified, methylated, identified, and quantified by capillary gas liquid chromatography as described (17).
General molecular genetic techniques. Standard molecular techniques were performed as described (26). Southern and Northern transfers and hybridization were performed using Zeta Probe GT membrane (Bio-Rad) according to manufacturer's instructions. For low-stringency probing, posthybridization washes were conducted at 50°C. SCD1 homologs were isolated by screening a commercial carp liver cDNA library (Stratagene) as described previously (32). RNA was isolated from carp liver as described by Chomzynski and Sacchi (6). Northern blots were quantified using the STORM 840 and ImageQuant software (Molecular Dynamics).
Genomic DNA was isolated from carp erythrocytes by a modified extraction protocol (M. Hughes, personal communication). Washed erythrocytes from 0.5 ml blood were hypotonically lysed with 5 ml of a solution containing 5 mM MgCl2 and 10 mM CaCl2. The nuclei and cell debris were washed and resuspended in 9 ml buffer B (0.1 M NaCl, 40 mM EDTA, 50 mM Tris · HCl, pH 8.0) in a sterile Oakridge test tube. One-half milliliter of a solution containing 5% SDS (wt/vol) and 4 mg/ml proteinase K was added, and the mixture was incubated overnight at 50°C. This was mixed with an equal volume of saturated phenol (pH 8.0), overlaid with 2 ml of L phase lock gel (5 Prime > 3 Prime, Boulder, CO), and the tube was centrifuged at 13,000 g for 5 min. The resulting supernatant was removed and extracted against equal volumes of phenol-chloroform and chloroform-isoamyl alcohol, again using phase lock gel. DNA was precipitated from this solution with 0.1 vol of 3 M sodium acetate (pH 5.2) and 0.7 vol isopropanol before washing with 70% ethanol followed by resuspension in TE buffer (10 mM Tris · HCl, 1 mM EDTA, pH 8). Plasmid DNA was prepared using Wizard Miniprep kits (Promega) according to the manufacturer's instructions. cDNAs and DNA inserts were sequenced using the ABI 373A sequencer, and the resulting sequences were compiled and analyzed using DNAStar (LaserGene). Computer analysis of predicted protein sequences was performed using the PROSITE program, while homology searches were performed using the TFAST and BLITZ programs. All homology programs were accessed via the EBI website (http://www.ebi.ac.uk/). DNA probes for Southern and Northern hybridization were labeled by random priming using High Prime (Boehringer) as per manufacturer's instructions. Probes for the 3'-untranslated region (UTR) of Cds1 and Cds2 comprised the HindIII fragment spanning nucleotides 1388-2500 (Cds1), and a XhoI fragment spanning nucleotides 1167-1994 (Cds2). The open reading frame (ORF) of Cds1 was excised using an ApaI, HindIII double digest and comprised nucleotides 347-1320 of Cds1. The 18S probe was a human 18S rRNA gene (Ambion) and was excised from the plasmid with an EcoRI digest.| |
RESULTS |
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Identification of a second carp desaturase, Cds2.
A putative
9-desaturase gene had previously been identified by
screening a commercial carp hepatic cDNA library with the rat
SCD1 (32). This gene has now been designated
Cds1 (carp desaturase 1, GenBank CC31864). The original cDNA
clone isolated, pcDsL-7, was used to reprobe the same cDNA library
under conditions of low stringency to determine if any additional
homologs were present. One hundred sixty eight cDNAs were isolated, and
their DNA was dot blotted as a sublibrary onto charged nylon membrane. This sublibrary was probed sequentially, at high stringency, with the
coding region, the 3'-UTR, and the 5'-UTR of pcDsL-7.
9-desaturase has been named Cds2 (EMBL AJ249259). A
second Cds2 sequence was found with an identical ORF but
with the addition of a 269-nt sequence in the 3'-UTR, this extra
sequence being present in the genomic copy of Cds2 (data not
shown). The genomic sequence excised from the shorter cDNA was flanked
by splice sites. The two cDNAs are therefore likely to represent alternatively spliced transcripts. This is consistent with a Northern analysis that revealed two alternative Cds2 transcripts
(Fig. 2).
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Expression of both Cds1 and Cds2 is temperature dependent. Total RNA was extracted from the livers of fish subjected to the cooling regime described previously (32) and probed under high stringency with probes prepared from the 3'-UTRs of Cds1 and Cds2. As a control each probe was cross-hybridized to various cDNAs to confirm its specificity for a single transcript (data not shown). Under this regime Cds1 was expressed in fish at 30°C, before cooling, but was repressed on cooling to 15°C (Fig. 2). A separate cooling experiment has shown that even a modest temperature reduction to 23°C is sufficient to repress its expression (data not shown). By contrast, the Cds2 probe revealed two transcripts that were shown by Northern analysis to be present in only one of three control fish acclimated to 30°C and then only at a very low level. Cooling to 17°C caused a significant increase in amounts of both Cds2 transcripts, which reached a maximum on day 3, by which time the fish had been cooled to 10°C. After day 3 Cds2 transcript levels partially decreased, reaching approximately one-half their maximum level on day 6. The relative abundance of the Cds1 and Cds2 transcripts over the time course of cold induction was quantified using the coding region of Cds1 as a probe. This probe binds Cds1 and Cds2 with equal intensity. In warm-acclimated animals, Cds1 accounted for >90% of Cds1-like transcripts, a situation that was reversed in 10°C carp. Similarly, the relative levels of the two Cds2 transcripts changed over the time course of cold treatment, with the smaller transcript responding most strongly to cold induction, such that its abundance increased from 0.5 times (day 0) to over two times that of the larger species (day 3). From these data, it is clear that expression of Cds2 and not Cds1 is induced during cold acclimation and that Cds2 is subject to temperature-dependent differential splicing.
Dietary regulation of Cds1 and Cds2.
We have explored the differential regulation of Cds1 and
Cds2 in response to combined dietary and thermal
manipulation. Groups of 16 carp sampled randomly from a common
preacclimated stock were placed in each of four identical 1,000-liter
tanks at 30°C. Carp in two of the four tanks were fed a normal trout
pellet while the remaining animals were fed a pelleted diet enriched in
saturated fats at the expense of polyunsaturated fats. Fish were killed and sampled for transcript analysis at 0 and 14 days. At day
14, a subsample of animals from both dietary regimes was cooled to 15°C and sampled, together with control fish maintained at 30°C, at
4 days (day 18) and 10 days (day 24) after
cooling. Figure 4, A and
B, shows the transcript levels of Cds1 and
Cds2 in replicate carp at each of the sampling times while
Fig. 4, C-J, plots their amounts relative to 18S rRNA.
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Tissue-specific expression of desaturase isoforms.
The tissue specificity of Cds1 and Cds2
expression has been examined in response to cooling. Replicate
warm-acclimated carp were killed on day 0 and day
2 of the standard cooling regime, and total RNA extracts from a
range of tissues were prepared and pooled for each time point. Figure
5 shows Northern blots probed with the
Cds1 ORF, which under the conditions used will hybridize to
both the Cds1 and Cds2 transcripts.
Cds1 homologous transcripts were evident in carp cooled to
17°C but not in control fish held throughout at 30°C. High levels
of transcript were only observed in the liver, although faint bands
were seen in several other tissues, including brain and spleen. These
data suggest that the liver is the principal tissue for the expression
of both desaturase isoforms.
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Complementation of the S. cerevisiae ole1 mutation by both Cds1 and
Cds2.
The suggested functions of Cds1 and Cds2 were
based on their similarity to the rat
9-desaturase structural gene
SCD1. We have sought to confirm this by testing the ability
of both Cds1 and Cds2 to complement the
ole1 mutation in the yeast S. cerevisiae. This
mutation disrupts the endogenous yeast
9-desaturase making the
growth of mutant strains dependent on provision of unsaturated fatty
acids in the culture medium (30). Functional
complementation of this mutation by a heterologous gene has previously
been used to demonstrate that SCD1 encodes a
9-desaturase
(31). We have developed an inducible construct containing
either Cds1 or Cds2 to allow the activity of the
enzyme to be directly tested.
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9-12) under normal growth conditions, it is a strong repressor
of OLE1 expression and is preferentially incorporated into
the membrane lipids of wild-type cells when added into the medium, to
replace the 16:1 and 18:1 products of the
9-desaturase activity
(20). ole1 strains show good growth on media
not containing monounsaturated fatty acids but supplemented with
linoleic acid (Fig. 6). The pXY::Cds1,
pXY::Cds2, and pXY::MBV transformed
cells were grown on media supplemented with varying levels of linoleic
acid using galactose as sole carbon source and then harvested for
analysis of their total fatty acids. The traces showed an abundance of 18:2 fatty acids in pXY213::MBV transformed cells grown on
0.1 µM linoleic acid, but no 16:1 or 18:1 peaks (Fig.
7). By contrast, the
pXY::Cds1 transformants showed peaks corresponding
to the
9-desaturation products, 16:1 and 18:1, that increased in
relative magnitude as the level of linoleic acid supplementation was
reduced.
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9-desaturases.
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DISCUSSION |
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A revised structure for Cds1.
We have previously cloned a homolog of rat SCD1 from a
commercial carp liver cDNA library (32). The original
clone, designated pcDsL-7, possessed a single long ORF encoding a
putative protein of 292 amino acid residues with 55 and 53% identity
with rat and mouse SCD1
9-desaturases, respectively. However, the
predicted protein product of pcDsL-7 was ~30 residues shorter at the
COOH-terminal end than the putative product of SCD1, and the
pcDsL-7 transcript possessed an unexpectedly long 5'-UTR of 520 nucleotides. We now show through characterization of other
SCD1 homologous clones that pcDsL-7 appears to contain an
internal deletion within the ORF and a distinct cDNA sequence
erroneously fused to the 5' end of Cds1. The ORF contained
by the other cDNAs encoded a putative protein of 327 amino acid
residues and a molecular mass of 37.7 kDa both of which more closely
match the COOH terminal sequences of the rat and yeast homologs. This
revised carp gene has been redesignated Cds1.
Relationship of Cds1 and Cds2. Rescreening the carp liver cDNA library revealed a group of transcripts with high identity to the coding sequence of Cds1 but not with the corresponding 3'-UTR. Sequencing of these clones revealed a second putative desaturase gene with high sequence similarity to the putative protein products of Cds1 (93%) and mouse SCD1 (62%). This new gene has been designated Cds2. Both isoforms are expressed in liver and not in any other tissue, at least in amounts detectable by our methodology. We have also identified and isolated the genomic sequences encoding these genes and confirmed their identity by sequencing (S. D. Polley, H. Evans, B. Cossins, and P. E. Tiku, unpublished data).
Mouse also expresses two
9-desaturase genes that are 89% identical
at the amino acid level; one (SCD1) is expressed constitutively in
adipose tissue and induced in liver by dietary treatment
(23) and the other (SCD2) is expressed in brain but not in
liver (16). An important question is whether these
isoforms are related to the two hepatic isoforms in carp or have arisen
independently. Figure 8 shows a
dendrogram based on similarity analysis from which it is evident that
the two carp isoforms are more similar to each other than either is to
the mouse or rat isoforms. Moreover, of the 33 amino acid substitutions
between the two mouse homologs, only five coincided with substitutions
between the two carp homologs and only two of these involved similar
substitutions, indicating no relationship between the respective mouse
and carp homologs. Because of this and the different tissue-specific
patterns of expression, we conclude that the two carp isoforms have a
phylogenetic origin different from the two mouse
9-desaturases and
are therefore likely to have a different physiological significance
compared with those observed in the mammals.
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Complementation of yeast ole1 mutation by Cds1 and Cds2.
Although both the carp putative desaturases have a high sequence
identity with the rat SCD1, it was important to determine whether either or both sequences code for a functional
9-desaturase. We have tested both genes by complementation of a yeast strain (ole1) that is deficient in its endogenous
9-desaturase
activity and is auxotrophic for monounsaturated fatty acids
(30). We have shown that both genes restored growth to
yeast cultures when their expression is induced by growth with
galactose as sole carbon source but not when it is repressed by glucose
(Fig. 6). Moreover, cultures complemented with either Cds1
or Cds2 produced monounsaturated fatty acids demonstrating
unequivocally that these genes code for
9-desaturases.
Temporal and spatial regulation of the two isoforms during chronic cooling. Previous work has shown that the enzymatic activity of the hepatic desaturase was low in 30°C-acclimated carp but increased 8- to 10-fold in the 4-5 days after cooling to 10°C (32). This was associated with a transient increase in amounts of Cds transcript levels, caused at least in part by an increased rate of transcription. We now show that the transcript evident in 30°C-acclimated carp is mainly that encoded by Cds1 (Fig. 2). Cooling of fish down to 10°C over 3 days led to a substantial increase in the level of Cds2 transcripts while the level of Cds1 was reduced. Thus only Cds2 is cold inducible while Cds1 expression is transiently repressed by cold.
Despite the low levels of Cds1 transcript in the liver of 30°C-acclimated carp, we have previously shown by Western immunoassay that these animals possess significant amounts of largely inactive desaturase protein whose enzymatic activity increases two- to fourfold during the first 2 days of cooling (32). The prevalence of Cds1 transcript in these animals suggests that this protein is largely, if not entirely, composed of CDS1, and that this isoform is subjected to activation. Because cooling leads specifically to increased levels of the Cds2 transcript, it follows that the subsequent increase in desaturase protein abundance observed in Western immunoassays is solely due to CDS2. Thus during the early period of chronic cooling the population of desaturase proteins comprises a mixture of the two isoforms with CDS2 possibly becoming predominant after prolonged cooling. At present we are unable to confirm this scenario first because the polyclonal antibody we have is unable to discriminate between the two isoforms and second because little is known about the degradation of desaturase proteins in fish. It is known, however, that the degradation of desaturases in the bacterium Escherichia coli is markedly temperature dependent (10).Dietary regulation of hepatic desaturases.
The presence of two desaturase isoforms in carp liver may permit the
differentiated regulation of desaturase activity to different stimuli,
perhaps as part of different response systems. It is well known that
mammalian hepatic
9-desaturases, most notably in rat and mouse, are
greatly induced by a dietary regime of starvation followed by refeeding
with a fat-free diet (23, 29). More significantly in the
present context, Wodtke and Cossins (37) have demonstrated
a long-lasting increase in hepatic desaturase activity in carp fed a
commercial diet containing elevated proportions of saturated fatty acids.
Temperature-specific desaturase isoforms?
Although we demonstrate that both Cds1 and Cds2
code for
9-desaturases, it is much less certain that the resulting
proteins are functionally identical. Functionally important changes to proteins can result from very few amino acid substitutions, so the 21 substitutions between CDS1 and CDS2 may well have a functional significance. One possibility is that the two isoforms might be catalytically most effective over a different range of temperatures such that their temperature-specific expression is temperature adaptive
as well as being associated with two different response systems. This
phenomenon is well documented for the regulation of skeletal muscle
contractile activity in summer- and winter-acclimated carp by the
differential expression of functionally distinct forms of the myosin
heavy chain molecule (11, 15, 34). However, expressing
both isoforms in ole1-deficient yeast allowed growth at
30°C, and there was no noticeable difference in the growth characteristics of the two complemented yeast strains.
9-desaturases, including the closely related grass carp, for
which there is only one gene (5), and the Antarctic Chionodraco. The dendrogram uses an insect desaturase as an
outgroup. This shows that the two carp isoforms are more similar to
each other than either is to the
9-desaturases of other species,
including grass carp, indicating that gene duplication and divergence
occurred more recently than the evolutionary divergence of the grass
and common carp. By contrast, rat SCD1 shows higher identity to the orthologous protein in mouse (SCD1) than it does to the other rat
desaturase (SCD2), indicating that gene duplication and divergence occurred before the divergence of two species. High bootstrap values
indicate a robust phylogeny. Even though the existence of a second
desaturase cannot be discounted in grass carp by sequencing of cDNAs,
Southern analysis with grass carp genomic DNA supports the existence of
only one (H. Evans, personal communication). A BLAST search of the
genome of the Japanese pufferfish Fugu rubripes (http://Fugu.jgi-psf.org) reveals the existence of two SCD1
homologs in scaffolds 64 and 5415. It is likely however that these two genes result from a very ancient duplication because they show a much
higher level of divergence than the two carp desaturases at both the
synonymous and nonsynonymous levels, the latter evident as a 70.5%
level of identity between the putative protein products of two fugu
paralogs. The role of these two SCD1 homologs is unknown at present.
In many tetraploid species the nonallelic gene copies are functional
but appear to be fully redundant (25). Divergence in the
regulatory sequences might, however, alter the spatial or temporal
pattern of expression, giving rise to novel expression characteristics.
This has been observed within a developmental context in mice where the
homologs Hoxa3 and Hoxd3 encode proteins with an identical biological
activity but with different expression patterns within the embryo
(13). Within an environmental context, the additional
complement of genes might provide a more plastic physiology, capable of
tolerating wider environmental conditions than other related groups of
fish, giving rise to the flexible genome concept (35). On
the other hand, duplicated genes can be fixed by the partitioning of
ancestral functions rather than the evolution of new functions per se
(9). Although the divergence of the regulatory regions of
Cds1 and Cds2 causes them to exhibit differentiated responses to cooling and dietary manipulation, it is not
clear whether the ancestral desaturase responded to both stimuli.
Distinguishing between these two contrasting models requires analysis
of outgroup species corresponding more closely to the ancestral
unduplicated gene, including perhaps the grass carp,
Ctenophanyngodon idella. This might indicate whether
possession of two desaturase isoforms and the partitioning of
responsiveness to different stimuli offer any selective advantage with
respect to environmental stress.
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ACKNOWLEDGEMENTS |
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We thank Dr. O. Day (Centre for Environment, Fisheries and Aquaculture, Weymouth) for providing the saturated fat diet and Prof. C. Martin and Dr. A. Platt for providing the yeast mutants.
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FOOTNOTES |
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This work was supported by grants from the Natural Environmental Research Council (NERC; UK) and from Scotia Holdings. R. T. Trueman was supported by a postgraduate studentship from NERC.
Present address for S. D. Polley: London School of Hygiene and Tropical Medicine, Unit of Infectious and Tropical Diseases, Dept. of Parasite Molecular Biology and Biochemistry, Keppel Street, London WC1E 7H, UK.
Address for reprint requests and other correspondence: A. R. Cossins, School of Biological Sciences, University of Liverpool, Liverpool L69 7ZB, United Kingdom (E-mail: cossins{at}liv.ac.uk).
The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
September 12, 2002;10.1152/ajpregu.00263.2002
Received 10 May 2002; accepted in final form 10 September 2002.
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