Myoglobin knockout (myo-/-)mice were previously reported to show no obvious phenotype but revealed several compensatory mechanisms which include increases in cardiac capillary density, coronary flow, and hemoglobin. The aim of this study was to investigate whether severe hypoxic stress can exhaust these compensatory mechanisms and whether this can be monitored on the gene and protein level. Myo-/- and Wildtype (WT) mice were exposed to hypoxia (10% O₂)for 2 weeks. Thereafter hemodynamic parameters were investigated by invasive measurement combined with magnetic resonance imaging. Cardiac gene and protein expression were analyzed using cDNA arrays and 2D gel electrophoresis plus mass spectrometry, respectively. Hematocrit levels increased from 44% (WT) and 48% (myo-/-) to 72% in both groups. Similar to WT controls hypoxic myo-/- animals maintained stable cardiovascular function (mean arterial blood pressure: 82.4 mmHg, ejection fraction: 72.5 %). Cardiac gene expression of hypoxic myo-/- mice differed significantly from WT controls in 17 genes (e.g. keratinocyte lipid binding protein: +202%; cytochrome c oxidase Vb: +41%). Interestingly, HIF 1 alpha remained unchanged in both groups. Proteome analysis revealed reduced levels of heart fatty acid binding protein and heat shock protein 27 both in hypoxic myo-/- and WT mice. Our data thus demonstrate that myo-/- mice do not decompensate during hypoxic stress but are surprisingly well adapted. Changes in energy metabolism of fatty acids may contribute to the robustness of myoglobin deficient mice.