The neonatal proximal tubule has a lower permeability to chloride, higher resistance and higher relative sodium to chloride permeability (P_Na/P_Cl) than the adult tubule, which is may be due to maturational changes in the tight junction. Claudins are tight junction proteins between epithelial cells that determine paracellular permeability characteristics of epithelia. We have previously described the presence of two claudin isoforms, claudin 6 and 9, in the neonatal proximal tubule and subsequent reduction of these claudins during postnatal maturation. The question is whether changes in claudin expression are related to changes in functional characteristics in the neonatal tubule. We transfected claudins 6 and 9 into MDCK II cells and performed electrophysiological studies to determine the resultant changes in physiological characteristics of the cells. Expression of claudin 6 and 9 resulted in an increased transepithelial resistance, decreased chloride permeability, and decreased P_Na/P_Cl and P_HCO3/P_Cl. These findings constitute the first characterization of the permeability characteristics of claudin 6 and 9 in a cell model and may explain why the neonatal proximal tubule has lower permeability to chloride and higher resistance than the adult proximal tubule.